Last update:4/19/07

Genome Analysis

ORF Open reading frame finding
SIM4 Genomic DNA andd cDNA alignment to find exon sequene.
UCSC Genome Browser Genome browser for different organisms, including human, mouse, rat, chick, fly, zebrafish and more.
VISTA Genome Browser Whole-genome alignments.
LocusLink Report Catalogue of known genes
Ensembl Genome browser, annotation of novel genes based on similarity to known gene, and EST.
Genescan, TWINSCAN Gene predication programs.
EPD Promoter prediction. Eukaryotic Promoter Database at EMBL, Heidelberg.
Promoter prediction Neural Network Promoter Prediction.

Sequence Comparison

NCBI BLAST Sequence comparison
BLAST 2 Sequence Aligment of two given sequences

BAC Resources

CHORI BAC Clone ordering, information of RP-BAC vector information.

Tools for Molecular Biology

NEBcutter Restriction digestion analysis
Primo Pro PCR primer design, including standard PCR, degernate primer, multiplex PCR, etc.

Mouse Resources

The Jackson Lab Collection of information for mouse genetics
TBASE Transgenic/Targeted Mutation Database
Mouse Genome Resources NCBI mouse genome resources
Gene expression Gene expression during development in the mouse. This is part of Mouse Genome Informatics.
Embryo Images Scaning EM images of mouse/human embryos. This is an excellent site to learn mouse development.
EMAP Mouse 3D altas
Mouse Brain Library Mouse brain (adult and E12.5) atlas
High Resolution Atlas